I've always been fond of starting up a cheer when someone is getting the beat down. Just as soon as someone starts to get hit cheer and clap, sometimes you can get the whole theatre in on it.
You could also fill up a straw with soda, put a finger over one end to hold it in, then put a drop on the neck of the person in front of you, repeat until the straw is empty then fill it up and do it again.
Tie someones shoelaces together.
Find a loud, expendable, noise making toy with wheels. turn it on and send it down the aisle.
Play with a bouncy-ball, hurl it at a wall. Bring a few.
Bring fake swords or those toy lightsabers and have a duel with a friend in front of the screen, works great during boring movies.